Monday, January 31, 2022

Alkyl benzyl sulphonates/ Alkyl benzene sulphonates(ABS)

 Alkyl benzyl sulphonates/ Alkyl benzene sulphonates (ABS)

  •  Main components of anionic detergents-surface active with polar (water soluble) sulphate and nonpolar alkyl end 

  • Aid in emulsification of fatty substances and cleaning occurs while these molecules make a monolayer around lipophilic droplets or particles.

  • Their molecules orient with their nonpolar end towards the lipophilic substance and the sulphonate end towards water.

  • Nonlinear alkylbenzene sulphonates or Branched alkylbenzene sulfonates (BAS) are recalcitrants and resistant to biodegradation and cause foaming problems in sewage treatment and  in the rivers.

  • ABS are easier to manufacture and bear superior detergent properties but the methyl branching of alkyl chain in them interferes with biodegradation of ABS,  because tertiary carbon atom blocks the normal β-oxidation.

  • Nonlinear alkylbenzyl sulphonates or Branched alkylbenzene sulfonates (BAS) were replaced with linear alkylbenzene sulfonates (LAS) during the 1960s due to environmental concerns




LAS (linear alkylbenzyl sulphonates) are biodegradable

  • It is biodegraded rapidly under aerobic conditions within weeks- oxidative degradation initiates at the alkyl chain.

  • Under anaerobic conditions it degrades very slowly or not at all, accumulates in sewage sludge, but once oxygenated, it will rapidly degrade

  • Thus, BAS to LAS conversion is a story where a synthetic molecule was redesigned to remove obstacles to biodegradation, while preserving the other useful characteristics of the compound.


Sunday, January 30, 2022

Gram-negative cell walls

        Much more complex than gram-positive walls

        The thin peptidoglycan layer - not more than 5 to 10% of the wall weight

        (E. coli - 2 nm thick; only one or two layers or sheets of peptidoglycan)


        The outer membrane lies outside the thin peptidoglycan layer


         The most abundant membrane protein is Braun’s lipoprotein, a small lipoprotein joined to the peptidoglycan and extends to the outer membrane by its hydrophobic end 


                        



        Outer membrane contains large, complex lipopolysaccharides (LPSs) and consist of three parts: (1) lipid A, (2) the core polysaccharide, and (3) the O side chain.


        The lipid A region buried in the outer membrane and part of the LPS molecule projects from the surface

        The core polysaccharide is joined to lipid A; In Salmonella, it is constructed of 10 sugars, many of them unusual in structure.

        The O side chain or O antigen is a polysaccharide chain extending outward from the core; varies in composition between bacterial strains


        O side chains readily recognized by host antibodies- gram- negative bacteria overcome host defenses by rapidly changing the nature of their O side chains to avoid detection.


        Antibody interaction with the LPS before reaching the outer membrane protect the cell wall from direct attack



        LPS contributes to the negative charge on the bacterial surface (core polysaccharide usually contains charged sugars and phosphate )

        stabilizes membrane structure

        Lipid A is toxic; LPS can act as an endotoxin; gram-negative bacterial infections

        Protective barrier- prevents or slows the entry of bile salts, antibiotics, and other toxic substances

        Outer membrane more permeable than the plasma membrane; permits the passage of small molecules like glucose and other monosaccharides

        Presence of special porin proteins (Larger molecules such as vitamin B12 must be transported across the outer membrane by specific carriers )

        The outer membrane also prevents the loss of constituents like periplasmic enzymes


        A space is seen between the plasma membrane and the outer membrane in gram- negative bacteria, and between the plasma membrane and cell wall in gram- positive bacteria-periplasmic space containing periplasm

        The periplasmic space contains many proteins, for example, hydrolytic enzymes, transport proteins etc

         The periplasmic space also contains enzymes involved in peptidoglycan synthesis and the modification of toxic compounds that could harm the cell.


Thursday, January 27, 2022

Recalcitrant halocarbons

 

  •   Common xenobiotic pollutants
  •      These compounds contain different numbers of halogen (e.g., CI, Br, F (fluorine), I) atoms in the place of H atoms.
  •     C-Halogen bond highly stable-cleavage requires considerable energy.
  • Halocarbons are chemically and biologically very stable- persistent compounds, cause environmental pollution
  • Two classes-
  • Recalcitrant Halocarbons

    • Haloalkyls- Haloalkyl propellants & solvents
    • Haloaromatics- Halobenzenes, halophenols & halobenzoates

 

Haloalkyl propellants & solvents

  • ·         C1-C2 alkanes in which all or almost all H atoms are replaced by halogens like chlorine, fluorine etc
  • ·         They are used as solvents (chloroform, CHCI3), as propellants in spray cans of cosmetics, paints etc., in condenser units of cooling systems (Freons, CCI3F, CCl2F2, CClF3, CF4),
  • ·         Chloroform, CCl4, dichloromethane, dichloro, trichloro, tetra chloro ethenes are industrial and cleaning solvents-  Spilled halocarbon propellants and solvents contaminate ground water
  • ·         C1-C2 halo alkanes like chloroform, freons etc. are volatile and escape into the stratosphere where they destroy the protective ozone (O3) layer leading to increased UV radiation-increased incidence of skin cancer and mutagenesis
  • ·         Phasing out of halocarbons as aerosol propellants now in practice-research to find out suitable alternatives as refrigerants-Freons gradually being replaced by C2 based halocarbons containing Cl2 in place of Fluorine- photo chemically less destructive to the ozone layer, though biodegradability continues to be problem
  • ·    Dehalogenation of organic compounds thermodynamically favored under anaerobic conditions by dehalogenases (reductive dehalogenation)
  • ·       Tetrachloro/perchloro ethene undergoes stepwise dechlorination and is finally converted to vinyl chloride (toxic) and finally, ethane by methanogenic bacterial consortia
  • ·    Aerobically, dichloro methane (DCM) can be utilised as carbon source by Pseudomonas. Dichloro ethene is acted upon by microbial consortium. Tricholoro ethene (TCE) is acted upon by methane monooxygenase to form TCE epoxide which further is converted to formate + CO, glyoxylate and dichloro acetate. TCE can also be converted to unstable formic acid and glyoxylic acid by toluene dioxygenase of Pseudomonas
  • ·   Chloro and bromomethane are acted upon by Methylococcus capsulatus to yield formaldehyde, dichloro methane, trichloromethane

(contd..)

Sunday, January 23, 2022

The cell wall- Gram-Positive Cell Wall


        Outer boundary of the cell; one of the most important parts of a Procaryotic cell

         Most bacteria have strong walls that give them shape and protect them from osmotic lysis (Exception- mycoplasmas and some Archaea) 

        Wall shape and strength is primarily due to peptidoglycan

        The cell walls of many pathogens contribute to their pathogenicity

         The wall can protect a cell from toxic substances and is the site of action of several antibiotics

Peptidoglycan or Murein

        polymer composed of identical subunits

        alternating sugar derivatives-

         N-acetylglucosamine (NAG) & N-acetylmuramic acid (NAM)

        Connected to the carboxyl group of N-acetylmuramic acid is a peptide chain of 4 alternating D- and L-amino acids (D-glutamic acid, L/D-alanine, diaminopimelic acid (not found in proteins) etc. (L-lysine, in some)



        The presence of D-amino acids protects against attack by most peptidases

        Chains of linked peptidoglycan subunits are joined by cross- links between the peptides

        Cross-linking results in a dense, interconnected network of peptidoglycan

        strong enough - retain the shape and integrity

        elastic and stretchable

        porous, for molecules to penetrate

Gram-Positive Cell Walls

        Thick, homogeneous cell wall of gram-positive bacteria composed primarily of peptidoglycan

        Contain large amounts of teichoic acids (polymers of glycerol or ribitol joined by phosphate groups)



                                                Gram-Positive Cell Wall


        Teichoic acids - connected by a covalent bond to N-acetylmuramic acid of the peptidoglycan or to plasma membrane lipids (lipoteichoic acids)

   Teichoic acids extend to the surface of the peptidoglycan-negatively charged- give the gram-positive cell wall its negative charge.

    Important in maintaining the structure of the wall.


        Teichoic acids - not present in gram-negative bacteria.





 



Wednesday, January 19, 2022

WASTEWATER TREATMENT

 

WASTEWATER TREATMENT

Large scale Wastewater treatment

Sewage is wastewater released by homes, industries agricultural fields and other human activities. It contains large amounts of organic matter and before disposal, sewage should be treated in sewage treatment plants. The purpose of waste water treatment is to remove contaminants from water so that the treated water can meet the acceptable quality standards for reuse or for being discharged into river. 

Composition of Sewage

Typical raw sewage has 99.9% water and 0.1% organic and inorganic solids. The following components make the sewage:

·         The organic impurities present in sewage are human faeces, animal wastes (like animal dung), urea (as urine), oil, fruits and vegetable wastes, pesticides, herbicides, etc.

·         The inorganic impurities present in sewage are nitrates, phosphates and metals.

·         The nutrients present in sewage are nitrogen and phosphorus.

·         The microbes present in sewage include bacteria, protozoa which cause water-borne diseases and others

Wastewaters from different sources accumulate in sewage, chemical composition vary depending upon the sources. Domestic sewage contain human wastes and wastewaters from personal washing, food preparation, laundry and washing of kitchen utensils. Relatively low in solids and more than 99% water. Industrial sewage contain organic compounds from sugar factories, paper mills, breweries, slaughter houses etc. and inorganic wastes from mines and metal industries. Microbial flora in sewage include algae, bacteria, fungi, protozoa, viruses etc.

Methods of waste water treatment depends on composition of waste water and required quality for treated water. 

The purpose of waste water treatment include;

§  To reduce strength of sewage

§  To make waste water less offensive

§  To prevent public health hazards from toxic effect of pollutants

Thus, sewage treatment involves a more complex set of procedures according to the volume and composition of organic matter in the water.

 Sewage treatment is carried out in three stages.

Primary treatment (Physical)

These treatment steps basically involve physical removal of large and small particles. Initially, floating debris is removed by filtration and then the grit are removed by straining/sedimentation. All solids that settle form the primary sludge, and the supernatant forms the effluent. The effluent from the primary settling tank is taken for secondary treatment.

Secondary treatment (Biological)

The primary effluent is subjected to biological treatment by aerobic microbes. While growing, the microbes degrade organic compounds in the effluent and reduces the BOD (biochemical oxygen demand). BOD is the amount of oxygen required to oxidize organic matter. The greater the BOD of waste water, more is its polluting potential.

    The effluent is then passed into a settling tank where the sediment or sludge is collected and later digested anaerobically. During digestion, bacteria produce a mixture of gases such as methane, hydrogen sulphide and carbon dioxide which form biogas. The effluent from the secondary treatment plant is generally released into natural water bodies like rivers and streams.

Tertiary treatment (Chemical)

Here, the fluid from the secondary treatment process is subjected to chemical treatments to remove phosphates and nitrates that might cause eutrophication or pollution. The ions are precipitated by adding calcium or iron, and the ammonia is released by oxidizing it to nitrate in the nitrification process or by stripping. Adsorption to activated charcoal is also used to remove many organic pollutants.

     During each stage of sewage treatment, the solids that sediment are collected as sludge which is burned or buried in landfills. Or, it can be treated in an anaerobic sludgedigesting tank where the microorganisms break down the organic matter of proteins, lipids, and cellulose into smaller substances such as organic acids, alcohols, and simpler compounds. Methane gas is produced in the sludge tank, and it can be burned as a fuel to operate the waste treatment facility. The remaining sludge is incinerated or buried in a landfill.

Steps of sewage treatment process:

I. Preliminary treatment of wastewater:

§  The main objective of preliminary treatment is to remove gross solids (such as plastics, cloths, cans, dead body of animals etc), grits and fats from waste water.

§  Some of the treatment technique applied for preliminary treatment purpose are;

i. Screening/straining:

§  Screening/straining is used to remove solid waste like plastics, cloths, dead animals from waste water. For this purpose, waste water is passed through a metal screens/strainers which allows water to pass and retain solid matter.

§  The removed solids are disposed by burning or composting.

 


 II. Primary treatment of wastewater:

§  After removal of gross solids, grits and fats, next step in treatment is sedimentation

i. Sedimentation:

§  Sedimentation tank is used for removal of suspended solids and some organic matters.

§  Settled solids are periodically removed -this technique removes about 90% of suspended solids and about 40% of organic matters from sewage.

Typical materials that are removed during primary treatment include

§  fats, oils, and greases

§  sand, gravels and rocks

§  larger settleable solids

§  floating materials

After primary treatment the effluent is taken for secondary/ biological treatment and the sludge is carried to sludge treatment plant

 

III. Secondary treatment of waste water:

§  In secondary treatment, dissolved or colloidal organic matters are present in sewage are removed by microorganisms. In this steps, microorganisms (mainly, bacteria and protozoa) utilize organic matter and converts them into inorganic minerals. These are utilized to supply their carbon and energy needs 

§  Removal of 90-95% BOD and many pathogens occur during this process

§  The main purpose of secondary treatment of sewage is to reduce BOD level.

 

§  Various techniques are used in secondary treatment of sewage. Some of them are;

     Trickling filter, Activated sludge system, Oxidation pond

 

i.   Trickling filter:

 

§  Trickling filter consists of filtering bed, spraying arm and water collecting chamber.

§  Filtering bed consists of a bed of porous material made of crushed stone/gravel/slag/coke/ limestone chip/synthetic material

§  Effluent or sewage from primary treatment tank is sprayed uniformly over the filter bed.

§  The set up is thus, a pile of rocks over which waste water is sprinkled with the revolving sprinkle and it slowly trickles down-Sewage aerated during the spraying process

  •  As the water slowly trickles down the rock bed, a gelatinous layer of bacteria, algae, protozoa and some fungi is produced on the surface of filter bed. This layer is called Zoogleal layer.
  • Filter bed coated with slimy bacterial growth –Zooglea ramigera- and other slime producers. Slime colonised by other bacteria like Pseudomonas, Beggiatoa, Flavobacterium etc, fungi, nematodes and protozoa.

§  As the water trickles through the filter bed, organic matter present in it are oxidized by microorganisms of zoogleal layer.

§  A stationary culture of microorganisms - continuous supply of nutrients from the sewage which is degraded into simpler end products

  The sewage recirculated repeatedly till the sufficient BOD reduction is achieved

§  Sewage is aerated by the circulation of air through the porous bed

§  Trickling filter can reduce BOD of sewage by about 65-85%

§  Newly constructed bed needs a few week to function- till the zoogleal layer is formed

§  Slime layer gets thicker occasionally and should be removed for efficient working of the system

 


 ii. Activated sludge system

§  Activated sludge system, consists of aeration tank, settling tank and sludge return system

§  Activated Sludge Process (ASP) is a widely used biological and aerobic treatment

§  At first incoming sewage from primary treatment plant is mixed with sludge drawn from a previous batch, which is known as activated sludge or return sludge.

§  The activated sludge contains large number of microorganisms and serves as inoculum of microorganisms.

§  After mixing of activated sludge, sewage is placed in aeration tank. In aeration tank, sewage is continuously aerated for 6-8 hours. During this period, microorganisms oxidizes the organic compounds to form CO2, H20 and NO3 etc.

§  Aeration leads to the formation of flocs, which are the masses of bacteria associated with fungal filaments to form mesh like structures. Flocs actively degrade the sewage since they contain large numbers of metabolizing bacteria with yeasts/fungi/protozoa

§  After oxidation, sewage is passed to settling tank and left undisturbed for 2-3 hours. Flocs/Sludge settle to the bottom. This sludge is called activated sludge, it can be used as inoculum for next batch of sewage.

§  Heterotrophs like E. coli, Enterobacter, Pseudumonas, Flavobacetrium, Zooglea, large filamentous bacteria, filamentous fungi, yeasts and protozoa are present in the flocs. Slime producers secrete slime which holds the flocs together

§  Settled sludge removed periodically to avoid bulking of sludge by rapid development of filamentous bacteria/fungi

§  Most of the sludge is removed and some returned to aeration tank for next round of treatment.

§  By sludge digestion process, BOD of sewage is reduced by 90%.

                           





Advantages

Ø  Significant reduction in BOD - by 85% to 90%

Ø  Clear, colourless and odourless effluent

Ø  Reduction in intestinal pathogens

 

Disadvantage

Ø  Foam formation due to the presence of some detergents in sewage (ABS)

 

iii.    Oxidation ponds:

§  Lagoons/stabilization ponds

§  Aerobic Secondary treatment method in rural areas/industrial sectors

§  sewage from primary treatment plant is placed in an oxidation pond and left there for 10-40 days.

§  During this period in oxidation pond, microorganisms oxidize the organic matter present in sewage.

§  Organic materials degraded by heterotrophic bacteria (aerobic heterotrophic zone)  into simpler forms which in turn allow algal growth (photic zone)

§  Oxygen released by algae during photosynthesis is utilized by microorganism for oxidation of organic compounds. During oxidation CO2 and H2O are released which are utilized by algae (Chlorella, Scenedesmus, Spirulina species) for photosynthesis. Therefore, there is mutually beneficial relationship between algae and bacteria.

§  Some oxygen is also derived from atmosphere for oxidation because oxidation pond is open system.

§  The oxidation pond remains aerobic during day time and first hours of night. During this period oxidation of organic compound (aerobic decomposition) takes place. During rest hours of night condition become anaerobic and anaerobic decomposition of organic compound takes place.

  • Finally the sewage is removed from oxidation ditch through outlet for tertiary treatment.


 Advantages

Ø  It is very simple and easy technique

Ø  Treated sewage can be utilized for irrigation

 Disadvantages

Ø  Holding time is very long (10-40 days)

Ø  It require large area

Ø  It creates bad odor. It may become breading place for mosquitoes and other vectors

Ø  It is influenced by seasonal temperature

 

Tertiary treatment (Chemical)

Here, the fluid from the secondary treatment process is subjected to chemical treatments to remove phosphates and nitrates that might cause eutrophication or pollution. The ions are precipitated by adding calcium or iron, and the ammonia is released by oxidizing it to nitrate in the nitrification process or by stripping. Adsorption to activated charcoal is also used to remove many organic pollutants.

  Single dwelling units /Household wastewater treatment

 Used for small scale/domestic waste water treatment. Household wastes are treated in single units eg., Cesspools, Septic tank, lagoons

 Cesspool

         Temporary arrangement where house sewage is discharged into a tank- in cases, where a well-defined sewage management system is absent

         Cesspools are constructed underground- it has walls of cylindrical rings with pores with an opening near ground level


 •         Wastewater enters through the opening/inlet- liquids escape into the surrounding soil and the solid matter retained in the tank

         Bottom of the cesspool opens to the underground; suspended solid matter settles down and form sludge at the bottom

         Water passes out through the pores in the walls to the surrounding soil

         Organic materials are digested by primarily aerobic and then anaerobic bacteria

      After a time, the crevices become filled with soil and other solid matter, and the leeching process is interfered with, so occasional cleaning to be done (with strong acids) 


Septic tank

  • The septic system is a waste treatment facility on a small scale.
  • In a septic tank, household sewage is digested by anaerobic bacteria, and solids settle to the bottom of the tank. The water seeps out  and enters the soil, where bacteria complete the breakdown processes.

 

  • Septic tank is prepared under the ground- Small rectangular chambers just below ground level
  • Sewage along with toilet content is placed into septic tank where heavier solid wastes settle down to from sludge whereas lighter solids including fats form layer on top of sewage called scum.

§  In septic tank organic compounds in sewage is anaerobically digested by anaerobic microorganisms such as methanogenic bacteria.

§  After anaerobic decomposition, the sludge become stable and inoffensive whereas liquids in sewage percolates into soil from septic tank. Liquid effluent is taken through pipes in distribution box and discarded underground

 

  • Sedimentation as well as biodegradation of sedimented sludge
  • Effective for small settings- however effluent should be further treated before disposal since there is no complete removal of pathogens
  •  Drainage prevented from entering drinking water supply
  • Should be located away from drinking water source
  • Should be de-sludged at regular intervals
  • Two compartment setup preferred now; more effective sedimentation

  Oxidation ponds

         Useful if comparatively large area of land is available

         small ponds/lagoons

         Organic materials undergo aerobic digestion whereas sediments undergo anaerobic digestion

 

  Imhoff tank

         Designed by Karl Imhoff – German Engineer

         A chamber for receiving and processing of sewage

    Clarification of sewage occurs by simple settling and sedimentation, followed by anaerobic digestion of the sludge

 


 

         There is an upper chamber for sedimentation, collected solids slide down into a lower chamber and is digested

         The two chambers are unconnected, with sewage flows in to the upper sedimentation chamber and no flow of sewage in the lower digestion chamber

         Sludge is collected in the lower chamber where it undergoes anaerobic digestion

     The lower chamber has separate biogas vents and pipes for the removal of digested sludge, typically after 6-9 months of digestion.

         It is basically a two-story septic tank- retains the septic tank's simplicity while eliminating many of its drawbacks, such as mixing of fresh sewage and septic sludge in the same chamber.

 

         Imhoff cone: used in drinking water treatment facilities

Penicillin Fermentation

  Antibiotic  - defined by  Selman Waksman  as “an organic compound produced by one microorganism that,  at great dilutions , inhibits the g...