Monday, August 9, 2021

Nitrogen Cycle - Assimilation, Nitrification, Ammmonification, Denitrification

 

Assimilation is the process by which plants and animals incorporate the NO3- and ammonia formed through nitrogen fixation and nitrification. Plants take up these forms of nitrogen through their roots, and incorporate them into plant proteins and nucleic acids. Animals are then able to utilize nitrogen from the plant tissues.

Nitrification

Nitrification is the process that converts ammonia to nitrite and then to nitrate and is an important step in the global nitrogen cycle. It is a two-step process in which NH3/ NH4+ is converted to NO2- by the soil bacteria called ammonia-oxidizers such as Nitrosopumilus, Nitrosospira etc Ammonia-oxidizing bacteria have been found to be abundant in oceans, soils, and salt marshes, also.

                         

The oxidation of nitrite (NO2-) to nitrate (NO3-) is carried out by a completely separate group of prokaryotes, known as nitrite-oxidizing Bacteria. Some of the genera involved in nitrite oxidation include  Nitrobacter and Nitrococcus.

For complete nitrification, both ammonia oxidation and nitrite oxidation must occur.

 

Ammonia- and nitrite-oxidizers also play a very important role in wastewater treatment facilities by removing harmful levels of ammonium that could lead to the pollution of the receiving waters. Ammonia- and nitrite-oxidizers help to maintain healthy aquaria by facilitating the removal of potentially toxic ammonium excreted in fish urine.

 

Anammox

Traditionally, all nitrification was thought to be carried out under aerobic conditions, but recently a new type of ammonia oxidation occurring under anoxic conditions was discovered. Anammox (anaerobic ammonia oxidation) is carried out by anammox bacterium like Brocadia anammoxidans. Anammox bacteria oxidize ammonia by using nitrite as the electron acceptor to produce gaseous nitrogen. Anammox bacteria were first discovered in anoxic bioreactors of wasterwater treatment plants but have since been found in a variety of aquatic systems, including low-oxygen zones of the ocean, coastal and estuarine sediments, mangroves, and freshwater lakes. In some areas of the ocean, the anammox process is considered to be responsible for a significant loss of nitrogen.

 

Ammmonification

When an organism excretes waste or dies, the nitrogen in its tissues is in the form of organic nitrogen (e.g. amino acids, DNA). Various fungi and prokaryotes then decompose the tissue and release inorganic nitrogen back into the ecosystem as ammonia in the process known as ammonification. The ammonia then becomes available for uptake by plants and other microorganisms for growth.

 

Denitrification

Denitrification is the process that converts nitrate to nitrogen gas, thus removing bioavailable nitrogen and returning it to the atmosphere. Dinitrogen gas (N2) is the ultimate end product of denitrification, but other intermediate gaseous forms of nitrogen exist. Some of these gases, such as nitrous oxide (N2O), are considered greenhouse gasses, reacting with ozone and contributing to air pollution.


 

Denitrification is an anaerobic process, occurring mostly in soils and sediments and anoxic zones in lakes and oceans. Some denitrifying bacteria include species in the genera BacillusParacoccus, and Pseudomonas.

Denitrification is important in that it removes fixed nitrogen (i.e., nitrate) from the ecosystem and returns it to the atmosphere in a biologically inert form (N2). Wetlands provide a valuable place for reducing excess nitrogen levels via denitrification processes. This is particularly important in agriculture where the loss of nitrates in fertilizer is detrimental and costly. Denitrification in wastewater treatment plays a very beneficial role by removing unwanted nitrates from the wastewater effluent, thereby reducing the chances that the water discharged from the treatment plants will cause undesirable consequences (e.g., algal blooms).

  

Ecological Implications of Human Alterations to the Nitrogen Cycle

1.     Many human activities have a significant impact on the nitrogen cycle. Burning fossil fuels, application of nitrogen-based fertilizers, and other activities can dramatically increase the amount of biologically available nitrogen in an ecosystem.

2.     Nitrogen availability often limits the primary productivity of many ecosystems, hence, large changes in the availability of nitrogen can lead to severe alterations of the nitrogen cycle in both aquatic and terrestrial ecosystems. Industrial nitrogen fixation has increased exponentially since the 1940s, and human activity has doubled the amount of global nitrogen fixation

3.     In terrestrial ecosystems, the addition of nitrogen can lead to nutrient imbalance in trees, changes in forest health, and declines in biodiversity. With increased nitrogen availability there is often a change in carbon storage, thus impacting more processes than just the nitrogen cycle.

4.     In agricultural systems, fertilizers are used extensively to increase plant production, but unused nitrogen, usually in the form of nitrate, can leach out of the soil, enter streams and rivers, and ultimately make its way into our drinking water.

5.     Much of the nitrogen applied to agricultural and urban areas ultimately enters rivers and nearshore coastal systems. In nearshore marine systems, increases in nitrogen can often lead to anoxia (no oxygen) or hypoxia (low oxygen), altered biodiversity, changes in food-web structure, and general habitat degradation. One common consequence of increased nitrogen is an increase in harmful algal blooms. Toxic blooms of certain types of dinoflagellates have been associated with high fish and shellfish mortality in some areas.

6.     Alterations to the nitrogen cycle may lead to an increased risk of parasitic and infectious diseases among humans and wildlife.

7.     Increases in nitrogen in aquatic systems can lead to increased acidification in freshwater ecosystems.

 

Nitrogen is the most important nutrient in regulating primary productivity and species diversity in both aquatic and terrestrial ecosystems. Microbially-driven processes such as nitrogen fixation, nitrification, and denitrification, constitute the bulk of nitrogen transformations, and play a critical role in the fate of nitrogen in the Earth's ecosystems.

 

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